Bioinformatics Registering Entry @ ASCC BioPortal Hsin-Yen Chen and Chi-Wei Wang The educated community Sinica Processin.


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The scholarly world Sinica Computing Center. Nov. 18~21, 2003. SC2003, Phoenix, ... Lattice joins Network Computing as its key part. Network may include new ...
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Bioinformatics Computing Portal @ ASCC BioPortal Hsin-Yen Chen & Chi-Wei Wang Academia Sinica Computing Center Nov. 18~21, 2003 SC2003, Phoenix, USA ASCC Bioinformatics IT Service/Support Team

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Introduction (3) Network High throughput engineering Sequence examination instruments (CE 1) UI (Web server) Virtual Organization GRID innovation Database bunch (DBMS) Structure science apparatuses (CE2)

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Grid + Web Service Solution Grid is a (system) domain that gives uniform access and administration to countless and dispersed assets Grid is not clump schedulers, group supervisors, or capacity frameworks that happen to be associated with the Internet Grid consolidates Network Computing as its crucial segment Grid may include new norms that broadens the system convention layers Web Services is to shroud the intricacy and give straightforward access to the Grid administrations Typical parts are: WSDL, UDDI and SOAP However, Grid is still to a great extent a structure, express backing to Bioinformatics and Contents should be worked out

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Conceptual Bio-Grid Application Infrastructure Life Scientist ACCESS GRID Bio Portal Web Life Science A pplications IBM WebSphere , OGSA Data Analysis/Visualization Federated Database Oracle, DB2, MySQL, Text document IBM DiscoveryLink Grid Middleware Network/Computing Infrastructure

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Grid Enabled BioPortal@ASCC Design Considerations Allows for the end client to share the registering assets and complex databases under one framework The size of figuring asset can be re-sized as required The processing asset can be allotted progressively The complexities of registering assets assignment ought to be covered up by web interface

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Grid Enabled BioPortal@ASCC Implemention A Web-based uniform passage for giving bioinformatics figuring administration to science specialists worldwide The incorporation of heterogeneous figuring stages The combination of united bioinformatics information bases A high throughput processing environment Current Status Open for On-line administrations since July 2003 Based on home developed matrix copied middleware On-line applications including Analysis Tools: NCBI BLAST (various types), CRASA , FASTA, OPASS , R (Microarray investigation), and so on. Databases: SMD Web Site: http://bits.sinica.edu.tw Sponsor: National Research Program for Genomic Medicine

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System Architecture - Schematic Diagram

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BioPortal@ASCC http://bits.sinica.edu.tw

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Future works Expand application suites to satisfy the NRPGM need Build important life science databases Federated database usage Collaborate with IBM, Taiwan Add all the more figuring components Migrate to IBM WebSphere entrance environment

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Thank you!

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